Phylum Amoebozoa Lühe, 1913
Status: extant
   Subphylum Conosa Cavalier-Smith, 1998 see Infraphylum Conosa Cavalier-Smith, 1998
  Status: extant
     Infraphylum Archamoebae Cavalier-Smith, 1983 see Class Archamoebea Cavalier-Smith, 1983
    Status: extant
       Class Archamoebea Cavalier-Smith, 1983
      Status: extant
         Order Mastigamoebida Frenzel, 1892 see Order Rhizomastigida Doflein, 1916
        Status: extant
           Family Endolimacidae Cavalier-Smith, 2004
          Status: extant
             1 Genus Endolimax Kuenen & Swellengrebel, 1913
            Status: extant
             2 Genus Endamoeba Leidy, 1879
            Status: extant