Division Opisthokonta Cavalier-Smith, 1987 see Clade Opisthokonta Cavalier-Smith 1987, nom. cl. inval.
   Superkingdom Holomycota Liu, Steenkamp, Brinkmann, Forget, Philippe & Lang, 2009
     Kingdom Fungi R.T.Moore (1980) - fungi
       Subkingdom Chytridiomyceta Tedersoo, Sánchez-Ramírez, Kõljalg, Bahram, M. Döring, Schigel, T.W. May, M. Ryberg & Abarenkov (2018)
         Phylum Chytridiomycota Doweld (2001)
           Subphylum Chytridiomycotina Tedersoo, Sánchez-Ramírez, Kõljalg, Bahram, M. Döring, Schigel, T.W. May, M. Ryberg & Abarenkov (2018), nom. inval. see Subphylum Chytridiomycotina Caval.-Sm. (2012)
             1 Class Chytridiomycetes Moebius (1929) [monotypic]
             2 Class Cladochytriomycetes Tedersoo, Sánchez-Ramírez, Kõljalg, Bahram, M. Döring, Schigel, T.W. May, M. Ryberg & Abarenkov (2018) [monotypic]
             3 Class Mesochytriomycetes Tedersoo, Sánchez-Ramírez, Kõljalg, Bahram, M. Döring, Schigel, T.W. May, M. Ryberg & Abarenkov (2018)
             4 Class Lobulomycetes Tedersoo, Sánchez-Ramírez, Kõljalg, Bahram, M. Döring, Schigel, T.W. May, M. Ryberg & Abarenkov (2018) [monotypic]
             5 Class Polychytriomycetes Tedersoo, Sánchez-Ramírez, Kõljalg, Bahram, M. Döring, Schigel, T.W. May, M. Ryberg & Abarenkov (2018) [monotypic]
             6 Class Rhizophlyctidomycetes Tedersoo, Sánchez-Ramírez, Kõljalg, Bahram, M. Döring, Schigel, T.W. May, M. Ryberg & Abarenkov (2018) [monotypic]
             7 Class Rhizophydiomycetes Tedersoo, Sánchez-Ramírez, Kõljalg, Bahram, M. Döring, Schigel, T.W. May, M. Ryberg & Abarenkov (2018) [monotypic]
             8 Class Spizellomycetes Tedersoo, Sánchez-Ramírez, Kõljalg, Bahram, M. Döring, Schigel, T.W. May, M. Ryberg & Abarenkov (2018) [monotypic]
             9 Class Synchytriomycetes Tedersoo, Sánchez-Ramírez, Kõljalg, Bahram, M. Döring, Schigel, T.W. May, M. Ryberg & Abarenkov (2018) [monotypic]