| Amoeboaphelidiidae (Family) Cavalier-Smith, 2012 | Page: table 7 (p. 155) ("fam. n."). |
| Andaluciidae (Family) Cavalier-Smith, 2012 | Page: table 1 (p. 121) ("fam. n."). |
| Andalucina (Suborder) Cavalier-Smith, 2012 | Page: table 1 (p. 121) ("subord. n."). |
| Aphelidida (Order) Cavalier-Smith, 2012, nom. illeg. | Page: table 7 (p. 155) ("ord. n."). |
| Artodiscida (Order) Cavalier-Smith, 2012 | Page: 153, table 6 (p. 146) ("ord. n."). |
| Artodiscidae (Family) Cavalier-Smith, 2012 | Page: 153, table 6 (p. 146) ("fam. n."). |
| Carpomonadea (Class) Cavalier-Smith, 2012 | Page: table 1 (p. 122) ("cl. n."). |
| Caviomonadidae (Family) Cavalier-Smith, 2012 | Page: table 1 (p. 122) ("fam. n."). |
| Chilomastigida (Order) Cavalier-Smith, 2012 | Page: table 1 (p. 122) ("ord. n."). |
| Chilomastigidae (Family) Cavalier-Smith, 2012 | Page: table 1 (p. 122) ("fam. n."). |
| Columellidia (Superorder) Cavalier-Smith, 2012 | Page: table 6 (p. 146) ("superord. n."). |
| Creolimacidae (Family) Cavalier-Smith, 2012 | Page: table 7 (p. 155) ("fam. n."). |
| Cristomonadia (Subclass) Cavalier-Smith, 2012 | Page: table 1 (p. 121) ("subcl. n."). |
| Dysnectida (Order) Cavalier-Smith, 2012 | Page: table 1 (p. 122) ("ord. n."). |
| Dysnectidae (Family) Cavalier-Smith, 2012 | Page: table 1 (p. 122) ("fam. n."). |
| Eolouka (Subphylum) Cavalier-Smith, 2012 | Page: table 1 (p. 121) ("subphyl. n."). |
| Eotrichomonadia (Subclass) Cavalier-Smith, 2012 | Page: table 1 (p. 121) ("subcl. n."). |
| Fuscisporida (Order) Cavalier-Smith, 2012 | Page: table 6 (p. 146) ("ord. n."). |
| Hilomonadia (Superclass) Cavalier-Smith, 2012 | Page: table 3 (p. 132) ("supercl. n."). |
| Kipferliidae (Family) Cavalier-Smith, 2012 | Page: table 1 (p. 122) ("fam. n."). |
| Lamprodermina (Suborder) Cavalier-Smith, 2012 | Page: table 6 (p. 147) ("subord. n."). |
| Lucisporidia (Superorder) Cavalier-Smith, 2012 | Page: table 6 (p. 146) ("superord. n."). |
| Multirhiza (Superclass) Cavalier-Smith, 2012 | Page: table 3 (p. 132) ("supercl. n."). |
| Neolouka (Subphylum) Cavalier-Smith, 2012 | Page: table 1 (p. 122) ("subphyl. n."). |
| Olpidiales (Order) Caval.-Sm. (2012) | Page: table 8 (p. 157). ("ord. n."). |
| Piridae (Family) Cavalier-Smith, 2012 | Page: table 7 (p. 155) ("fam. n."). |
| Psorospermidae (Family) Cavalier-Smith, 2012 | Page: table 7 (p. 155) ("fam. n."). |
| Rhizomonadidae (Family) Cavalier-Smith, ined. | Page: table 6 (p. 146) ("Cavalier-Smith, in Cavalier-Smith and Scoble, submitted for publication"). |
| Rigidomastigidae (Family) Cavalier-Smith, ined. | Page: table 6 (p. 146) ("Cavalier-Smith, in Cavalier-Smith and Scoble, submitted for publication"). |
| Rozellida (Order) Cavalier-Smith, 2012 | Page: table 7 (p. 155) ("ord. n."). |
| Rozellidae (Family) Cavalier-Smith, 2012 | Page: table 7 (p. 155) ("fam. n."). |
| Saccinobaculidae (Family) Cavalier-Smith, 2012 | Page: table 1 (p. 121) ("fam. n."). |
| Schizoplasmodiidae (Family) Cavalier-Smith, 2012 | Page: table 6 (p. 146) ("fam. n."). |
| Semiconosia (Infraphylum) Cavalier-Smith, 2012 | Page: table 6 (p. 146) ("infraphyl. n."). |
| Soliformovidae (Family) Cavalier-Smith, 2012 | Page: table 6 (p. 146) ("fam. n."). |
| Sphaeroformina (Suborder) Cavalier-Smith, 2012 | Page: table 7 (p. 155) ("subord. n."). |
| Sulcomonadidae (Family) Cavalier-Smith, 2012 | Page: table 3 (p. 132) ("fam. n."). |
| Tricholimacidae (Family) Cavalier-Smith, 2012 | Page: table 6 (p. 147) ("fam. n."). |
| Trichomonadina (Suborder) Cavalier-Smith, 2012 | Page: table 1 (p. 121) ("subord. n."). |
| Trichonemidae (Family) Cavalier-Smith, 2012 | Page: 153. ("fam. n."). |
| Tsukubea (Class) Cavalier-Smith, 2012 | Page: table 1 (p. 121) ("cl. n."). |
| Variosia (Parvphylum) Cavalier-Smith, 2012 | Page: table 6 (p. 146) ("parvphyl. n."). |
| Breviatidae (Family) Cavalier-Smith, 2012 | Page: table 3 (p. 132) ("fam. n."). |
| Glissodiscea (Class) Cavalier-Smith, 2012 | Page: table 3 (p. 132) ("cl. n."). |
| Ichthyophonidae (Family) Cavalier-Smith, 2012 | Page: table 7 (p. 155) ("fam. n."). |
| Paramycia (Subphylum) Cavalier-Smith, 2012 | Page: table 7 (p. 155: "subphyl. n."). |
| Physodermatales (Order) Caval.-Sm. (2012) | Page: table 8 (p. 157) ("ord. n."). |
| Rhizomastigidae (Family) Cavalier-Smith, ined. | Page: table 6 (p. 147) ("Cavalier-Smith, in Cavalier-Smith and Scoble submitted for publication"). |
| Rozellidea (Class) Cavalier-Smith, 2012 | Page: table 7 (p. 155) ("cl. n."). |
| Sulcozoa (Phylum) Cavalier-Smith, 2012 | Page: 131, table 3 (p. 132). ("new phylum"). |
| Varisulca (Subphylum) Cavalier-Smith, 2012 | Page: table 3 (p. 132) ("subphyl. n."). |
| Apicomonada (Superclass) Cavalier-Smith, 1993 | Page: 131. |
| Apicomplexa (Infraphylum) Levine, 1970 | Page: 131. |
| Dinoflagellata (Superclass) Bütschli, 1885 | Page: 131. |
| Dinozoa (Infraphylum) Cavalier-Smith, 1981 | Page: 131. |
| Distomatina (Suborder) Senn, 1900 | Page: table 1 (p. 122) ("Klebs, 1892 (as Distomata) stat. n."). |
| Eopharyngea (Class) Cavalier-Smith, 1993 | Page: table 1 (p. 122) ("Cavalier-Smith, 1993 stat. n."). |
| Fornicata (Superclass) Simpson, 2003 | Page: table 1 (p. 122) ("supercl. n."). |
| Giardiina (Suborder) Cavalier-Smith, 1996 | Page: table 1 (p. 122) ("Cavalier-Smith, 1996 stat. n."). |
| Histionina (Suborder) Cavalier-Smith, 1993 | Page: table 1 (p. 121) ("subord. n. em."). |
| Honigbergiellina (Suborder) Čepička et al., 2010 | Page: table 1 (p. 121) ("Cepicka et al., 2010 stat. n."). |
| Hypotrichomonadina (Suborder) Čepička et al., 2010 | Page: table 1 (p. 121) ("Cepicka et al., 2010 stat. n."). |
| Macromycetozoa (Superclass) Fiore-Donno et al., 2010 | Page: table 6 (p. 146) ("supercl. n."). |
| Mycetozoa (Parvphylum) de Bary, 1859 ex Rostafiński, 1873 | Page: table 6 (p. 146) ("de Bary, 1859 ex Rostafinski, 1873 stat. n."). |
| Myzozoa (Subphylum) Cavalier-Smith & Chao, 2004 | Page: 131. |
| Perkinsozoa (Superclass) Norén et al., 1999 | Page: 131 ("new basal superclass"). |
| Physarina (Suborder) Macbride, 1922 | Page: table 6 (p. 147) ("subord. n."). |
| Protostelia (Superclass) Olive, 1970 | Page: table 6 (p. 146) ("supercl. n."). |
| Sporozoa (Superclass) Leuckart, 1879 | Page: 131. |
| Stemonitina (Suborder) Macbride, 1899 | Page: table 6 (p. 147) ("subord. n."). |
| Trichozoa (Infraphylum) Cavalier-Smith, 1997 | Page: table 1 (p. 121) ("Cavalier-Smith, 1997 em. 2003 stat. n."). |
| Apusozoa (Subphylum) Cavalier-Smith, 1997 | Page: table 3 (p. 132) ("Cavalier-Smith, 1997 em."). |
| Carpediemonadida (Order) Cavalier-Smith, 2003 | Page: table 1 (p. 122) ("Cavalier-Smith, 2003 em."). |
| Cristamonadida (Order) Brugerolle & Patterson, 2001 | Page: table 1 (p. 121) ("Brugerolle and Patterson, 2001 em."). |
| Entomomycetidae (Subclass) Caval.-Sm. (1998) | Page: table 8 (p. 157). ("Cavalier-Smith, 1998 em."). |
| Histionina (Suborder) Cavalier-Smith, 1993 | Page: table 1 (p. 121) ("subord. n. em."). |
| Loukozoa (Phylum) Cavalier-Smith, 1999 | Page: 124, table 1 (p. 121) ("Cavalier-Smith, 1999 em."). |
| Pedomycetidae (Subclass) Caval.-Sm. (1998) | Page: table 8 (p. 157). ("Cavalier-Smith, 1998 em."). |
| Protalveolata (Subphylum) Cavalier-Smith, 1991 | Page: 131. ("Cavalier-Smith, 1991"). |
| Retortamonadida (Order) Grassé, 1952 | Page: table 1 (p. 122) ("Grassé, 1952 em."). |
| Rumpomycetidae (Subclass) Caval.-Sm. (1998) | Page: table 8 (p. 157). ("Cavalier-Smith, 1998 em."). |
| Thecomonadea (Class) Cavalier-Smith, 1993 | Page: table 3 (p. 132) ("Cavalier-Smith, 1993 (as subclass; stat. n. 1995) em"). |
| Trichomonadea (Class) Kirby, 1947 | Page: table 1 (p. 121) ("Kirby, 1947 stat. n. Margulis, 1974 em."). |
| Zoomycetes (Class) Caval.-Sm. (1998) | Page: table 8 (p. 157). ("Cavalier-Smith, 1998 em."). |
| Zygomycotina (Infraphylum) Caval.-Sm. (1998) | Page: table 8 (p. 157). ("Cavalier-Smith, 1998 em."). |