| Anthemosomida (Order) Cavalier-Smith, 1993 | Page: 988. |
| Aphagea (Class) Cavalier-Smith, 1993 | Page: 987. |
| Apicomonada (Subphylum) Cavalier-Smith, 1993 | Page: 985. |
| Apicomonadea (Class) Cavalier-Smith, 1993 | Page: 987. |
| Athalamia (Subphylum) Cavalier-Smith, 1993 | Page: 986. |
| Bikonta (Branch) Cavalier-Smith, 1993 | Page: 984. |
| Chlorarachnia (Subkingdom) Cavalier-Sm. (1993) | Page: 988. |
| Chrysomeridae (Subclass) Cavalier-Sm. (1993) | Page: 989. |
| Ciliomyxa (Parvkingdom) Cavalier-Smith, 1993 | Page: 984. |
| Coelotrophea (Class) Cavalier-Smith, 1993 | Page: 988. |
| Colpodellida (Order) Cavalier-Smith, 1993 | Page: 987. |
| Colponemea (Class) Cavalier-Smith, 1993 | Page: 987. |
| Colponemida (Order) Cavalier-Smith, 1993 | Page: 987. |
| Copromyxida (Order) Cavalier-Smith, 1993 | Page: 988. |
| Diplokaryotia (Subclass) Cavalier-Smith, 1993 | Page: table 3 (p. 963). |
| Diplonemea (Class) Cavalier-Smith, 1993 | Page: 986. |
| Diplonemia (Subphylum) Cavalier-Smith, 1993 | Page: 984. |
| Diplonemidae (Family) Cavalier-Smith, 1993 | Page: 986. |
| Disporea (Class) Cavalier-Smith, 1993 | Page: table 3 (p. 963). |
| Entamoebia (Parvkingdom) Cavalier-Smith, 1993 | Page: 986. |
| Entamoebia (Phylum) Cavalier-Smith, 1993 | Page: 986. |
| Entamoebida (Order) Cavalier-Smith, 1993 | Page: 988. |
| Eogregarinea (Class) Cavalier-Smith, 1993 | Page: 987. |
| Eopharyngia (Subphylum) Cavalier-Smith, 1993 | Page: table 3 (p. 963: note a). |
| Euacanthia (Subclass) Cavalier-Smith, 1993 | Page: table 4 (p. 972). |
| Euacatharia (Subclass) Cavalier-Smith, 1993 | Page: 988. |
| Eucentricidae (Subclass) Cavalier-Smith, 1993 | Page: 989. |
| Euchromista (Subkingdom) Cavalier-Sm. (1993) | Page: 988. |
| Eucoccidea (Class) Cavalier-Smith, 1993 | Page: 988. |
| Euglenia (Subclass) Cavalier-Smith, 1993 | Page: 987. |
| Eumyxa (Subphylum) Cavalier-Smith, 1993 | Page: table 4 (p. 971). |
| Eustigmista (Infraphylum) Cavalier-Smith, 1993 | Page: 961. |
| Eustigmista (Infradivision) Cavalier-Smith, 1993 | Page: 989. |
| Flavoretea (Class) Cavalier-Sm. (1993) | Page: 989. |
| Gamontozoa (Subphylum) Cavalier-Smith, 1993 | Page: 985. |
| Gastromyxia (Subclass) Cavalier-Smith, 1993 | Page: table 4 (p. 971). |
| Hemidinia (Superclass) Cavalier-Smith, 1993 | Page: 987. |
| Holacanthia (Subclass) Cavalier-Smith, 1993 | Page: 988. |
| Holosea (Class) Cavalier-Smith, 1993 | Page: 988. |
| Ixoplasmida (Order) Cavalier-Smith, 1993 | Page: 988. |
| Kinetomonada (Subphylum) Cavalier-Smith, 1993 | Page: 984. |
| Kinetoplasta (Subphylum) Cavalier-Smith, 1993 | Page: 984. |
| Luffisphaerida (Order) Cavalier-Smith, 1993 | Page: 988. |
| Luffisphaeridae (Family) Cavalier-Smith, 1993 | Page: 988. |
| Lyromonadidae (Family) Cavalier-Smith, 1993 | Page: 986. |
| Lyromonas (Genus) Cavalier-Smith, 1993 | Page: 986. |
| Minisporea (Class) Cavalier-Smith, 1993 | Page: table 3 (p. 963). |
| Neogregarinea (Class) Cavalier-Smith, 1993 | Page: 988. |
| Neosarcodina (Parvkingdom) Cavalier-Smith, 1993 | Page: 986. |
| Nucleohelea (Class) Cavalier-Smith, 1993 | Page: 988. |
| Oikomonadea (Class) Cavalier-Sm. (1993) | Page: 989. |
| Opalomyxa (Superphylum) Cavalier-Smith, 1993 | Page: 984. |
| Patelliferea (Class) Caval.-Sm. (1993) | Page: 989. |
| Peranemea (Class) Cavalier-Smith, 1993 | Page: 987. |
| Percolomonada (Superclass) Cavalier-Smith, 1993 | Page: 986. |
| Petalomonadea (Class) Cavalier-Smith, 1993 | Page: 986. |
| Petalomonadida (Order) Cavalier-Smith, 1993 | Page: 987. |
| Phagodinia (Subclass) Cavalier-Smith, 1993 | Page: 987. |
| Phagodiniidae (Family) Cavalier-Smith, 1993 | Page: 987. |
| Pleistophorea (Class) Cavalier-Smith, 1993 | Page: table 3 (p. 963). |
| Ploeotiida (Order) Cavalier-Smith, 1993 | Page: 987. |
| Polaroplasta (Subphylum) Cavalier-Smith, 1993 | Page: table 3 (p. 963). |
| Raphidochloridae (Subclass) Cavalier-Smith, 1993 | Page: 988. |
| Raphidochrysidae (Subclass) Cavalier-Smith, 1993 | Page: 988. |
| Raphidomonadia (Superclass) Cavalier-Smith, 1993 | Page: 988. |
| Raphoidae (Subclass) Cavalier-Smith, 1993 | Page: 989. |
| Rhabdomonadia (Subclass) Cavalier-Smith, 1993 | Page: 987. |
| Rhizochloridae (Subclass) Cavalier-Sm. (1993) | Page: 989. |
| Rudimicrospora (Subphylum) Cavalier-Smith, 1993 | Page: table 3 (p. 963). |
| Sarcinochrysidae (Subclass) Cavalier-Sm. (1993) | Page: 989. |
| Spasmaria (Subphylum) Cavalier-Smith, 1993 | Page: 985. |
| Striatorhiza (Superclass) Cavalier-Smith, 1993 | Page: 986. |
| Syndina (Superclass) Cavalier-Smith, 1993 | Page: 987. |
| Thoracosphaeroidia (Subclass) Cavalier-Smith, 1993 | Page: 987. |
| Trepomonadea (Class) Cavalier-Smith, 1993 | Page: table 3 (p. 963). |
| Tribophycidae (Subclass) Cavalier-Sm. (1993) | Page: 989. |
| Unikaryotia (Subclass) Cavalier-Smith, 1993 | Page: table 3 (p. 963). |
| Acantharea (Class) Haeckel, 1881 | Page: table 4 (p. 972). |
| Acantharia (Class) Haeckel, 1881 | Page: 988. |
| Actinomyxea (Pseudoclass) Štolc, 1899 | Page: table 4 (p. 972). |
| Actinopoda (Parvkingdom) Calkins, 1902 | Page: 985. |
| Alveolata (Parvkingdom) Cavalier-Smith, 1991 | Page: 985. |
| Astasida (Order) Ehrenberg, 1838 | Page: table 4 (p. 970). |
| Axoplasthelida (Order) Febvre-Chevalier, 1984 | Page: table 4 (p. 972). |
| Axostylaria (Subphylum) Grassé, 1952 | Page: table 3 (p. 963). |
| Centricea (Class) Schütt, 1896 | Page: table 2 (p. 961). |
| Centrohelea (Class) Kühn, 1926 | Page: 988; table 4 (p. 972). |
| Centroplasthelida (Order) Febvre-Chevalier, 1984 | Page: table 4 (p. 972). |
| Chrysomonadidae (Subclass) Saville Kent (1881) | Page: table 2 (p. 961). |
| Coccidia (Superclass) Leuckart, 1879 | Page: 988. |
| Cristidiscoidia (Subclass) Page, 1987 | Page: 988, table 4 (p. 972). |
| Cristivesiculatia (Subclass) Page, 1987 | Page: 988. |
| Cryptista (Infrakingdom) Caval.-Sm. (1989) | Page: table 2 (p. 961). |
| Desmocapsoidia (Subclass) Pascher, 1914 | Page: 987. |
| Diatomea (Infraphylum) Caval.-Sm. (1993) | Page: table 2 (p. 961). ("Agardh, 1824 stat. nov."). |
| Dictyochia (Superclass) Haeckel (1894) | Page: 988. |
| Dinokaryota (Superclass) Fensome et al., 1993 | Page: 987. ("supercl. nov."). |
| Diplomonadida (Order) Wenyon, 1926 | Page: table 3 (p. 963). |
| Enteromonadida (Order) Brugerolle, 1975 | Page: table 3 (p. 963). |
| Euglenozoa (Infrakingdom) Cavalier-Smith, 1981 | Page: 984. |
| †Fusulinidia (Subclass) Fursenko, 1958 | Page: table 4 (p. 972). |
| Gregarinia (Superclass) Dufour, 1828 | Page: table 4 (p. 971). |
| Gymnamoebia (Subclass) (Haeckel, 1862) Cavalier-Smith, 1993 | Page: table 4 (p. 972). |
| Gymnodinoidia (Subclass) Poche, 1913 | Page: 987. |
| Hematozoa (Infraphylum) Vivier, 1982 | Page: 985. |
| Hemimastigophora (Subphylum) Foissner, Blatterer & Foissner, 1988 | Page: 984-985. |
| Heterokaryota (Superphylum) Hickson, 1903 | Page: 985. |
| Heterotrichia (Subclass) (Stein, 1859) Cavalier-Smith, 1993 | Page: table 4 (p. 971). |
| Hymenostomatia (Subclass) (Delage & Hérouard, 1896) Cavalier-Smith, 1993 | Page: table 4 (p. 972). |
| Hypotrichia (Subclass) (Stein, 1859) Cavalier-Smith, 1993 | Page: table 4 (p. 971). |
| Lobosea (Class) (Carpenter, 1861) Cavalier-Smith, 1993 | Page: 988. |
| Mesozoa (Parvkingdom) van Beneden, 1876 | Page: 986. |
| Monothalamea (Class) Haeckel, 1862 | Page: table 4 (p. 972). |
| Myxosporea (Pseudoclass) Bütschli, 1881 | Page: table 4 (p. 972). |
| Myxozoa (Parvkingdom) Grassé, 1970 | Page: 986. |
| Noctilucea (Class) Haeckel, 1866 | Page: 987. |
| Orthonectea (Class) Giard, 1879 | Page: table 4 (p. 972). |
| Paramyxia (Phylum) Chatton, 1911 | Page: 986. |
| Pavlovea (Class) Caval.-Sm. (1986) | Page: 989, table 2 (p. 961). |
| Pennatea (Class) Schütt, 1896 | Page: table 2 (p. 961). |
| Peranemida (Order) Bütschli, 1884 | Page: 987, table 4 (p. 970). |
| Peridinoidia (Subclass) Poche, 1913 | Page: 987. |
| Peritrichia (Subclass) Stein, 1859 | Page: table 4 (p. 972). |
| Polycystinea (Class) Ehrenberg, 1838 | Page: table 4 (p. 972). |
| Prorocentroidia (Subclass) Lemmermann, 1899 | Page: 987. |
| Radiolaria (Subphylum) Müller, 1858 | Page: table 4 (p. 972). |
| Reticulosa (Phylum) Carpenter, 1862 | Page: 986. |
| Retortamonadea (Class) Grassé, 1952 | Page: table 3 (p. 963). |
| Rotalidia (Subclass) Lankester, 1885 | Page: table 4 (p. 972). |
| Silicoflagellatea (Class) Borgert (1891) | Page: table 2 (p. 961). |
| Spirotrichea (Class) Bütschli, 1889 | Page: table 4 (p. 971). |
| Sporozoa (Infraphylum) Leuckart, 1879 | Page: 985. |
| Synuridae (Subclass) Caval.-Sm. (1993), stat. inval. | Page: table 2 (p. 961). |
| Choanozoa (Superphylum) Cavalier-Smith, 1981 | Page: 985 ("Cavalier-Smith, 1981, emend. stat. nov."), table 4 (p. 971: "Cavalier-Smith, 1983 stat. nov."). |
| Chrysista (Infraphylum) Caval.-Sm. (1993) | Page: table 2 (p. 961: "Cavalier-Smith, 1986 stat. nov."). |
| Dictyostelea (Class) Cavalier-Smith, 1993 | Page: table 4 (p. 971: "Lister, 1909 stat. nov."). |
| Dictyostelia (Subphylum) Olive, 1970 | Page: table 4 (p. 971: "Lister, 1909 stat. nov."). |
| Euglenoida (Subphylum) Bütschli, 1884 | Page: 984 ("Bütschli, 1884 stat. nov."), table 4 (p. 970: "Bütschli, 1884 (as Euglenoidina) emend. Senn, 1900 stat. nov."). |
| Parabasalia (Branch) Honigberg, 1973 | Page: 984, table 4 (p. 970). ("new branch"). |
| Raphidoista (Infraphylum) Caval.-Sm. (1986) | Page: 988. |
| Bicoecea (Class) Caval.-Sm. (1986) | Page: table 2 (p. 961). |
| Chromobiota (Infrakingdom) Caval.-Sm. (1986) | Page: table 2 (p. 961). |
| Ebridea (Class) Lemmermann, 1901 | Page: table 4 (p. 970). |
| Ellobiopsea (Class) Loeblich, 1970 | Page: table 4 (p. 971). |
| Eutreptida (Order) Leedale, 1967 | Page: 987. |
| Eutreptiida (Order) Leedale, 1967 | Page: table 4 (p. 970); 987. |
| Haemosporea (Class) Danilewsky, 1885 | Page: 988; table 4 (p. 971). |
| Myxogastrea (Class) Fries, 1829 | Page: table 4 (p. 971). |
| Oxyrrhida (Order) Sournia, 1990 | Page: table 4 (p. 971). |
| Pelagophycea (Class) Andersen & Saunders, 1993, nom. emend. | Page: table 2 (p. 961). |
| Phaeophycea (Class) Kjellman (1891) | Page: table 2 (p. 961). |
| Phytomyxea (Class) Engler & Prantl, 1897 | Page: table 4 (p. 970). |
| Pompholyxophyidae (Family) Cavalier-Smith, 1993, orth. inval. | Page: 988 ("Page, 1987"). |
| Rhabdomonadida (Order) Leedale, 1967 | Page: 987. |
| Stemonitia (Subclass) Ross, 1973 | Page: table 4 (p. 971). |